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5 If the new text has fewer chunks, create blank values to overwrite the old chunks that need to be cleared 6 Call PutAttributes with the new attribute values, setting the replace flag to true for each 6a If you are willing to make the comparisons, you can exclude unchanged attributes 7 Optionally, call DeleteAttributes for the now-blank chunks The extra step specific to storing extra text is to count the chunks and pass the empty string as a new value for each of the abandoned overflow attributesYou might be tempted to just delete the empty attributes and not overwrite them first with an empty value However, performing the update in one step is the only way to get atomicity If you do not do it in one step, you will have an item with bad data until consistency is reached During a failure, you could have bad data for an extended period By performing it in one step, the item will always have good data: either the old text or the new text

The javanetInterruptedIOException occurs when a read operation is blocked for sufficient time to cause a network timeout, as discussed earlier in the chapter Handling timeouts is a good way to make your code more robust and reliable

loop over time steps initialize_forces (N, Forces) if(time to update neighbor list) neighbor_list (N, Atoms, neighbors) end if vibrational_forces (N, atoms, forces) rotational_forces (N, atoms, forces) non_bonded-forces (N, atoms, neighbors, forces) update_atom_positions_and_velocities( N, atoms, velocities, forces) physical_properties ( Lots of stuff ) end loop

Another option is to use a multi-valued attribute to store all the text For example, if you have 100k of text, you might have an attribute named Body with 100 separate values The benefit of this approach is that you retain the ability to write queries that target the attribute, such as the following:

69 Summary

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The core algorithm, including pseudocode, was presented in Sec 313 While we won't repeat the discussion here, we do provide a copy of the pseudocode in Fig 57 The parallel algorithm is discussed in several of the patterns in the Finding Concurrency and Algorithm Structure design spaces Following are the key points from those discussions that we will need here along with the location of the original discussion 1 Computing the non_bonded_forces takes the overwhelming majority of the runtime

Communication over TCP with sockets is an important technique to master, as many of the most interesting application protocols in use today occur over TCP The Java socket API provides a clear and easy mechanism by which developers are able to accept communications as a server or initiate communications as a client By using the concepts discussed earlier involving input and output streams under Java, the transition to socket-based communication is straightforward With the level of exception handling built into the javanet package, it's also very easy to deal with network errors that occur at runtime

SELECT * FROM posts WHERE Body LIKE '%turbine%'

(Sec 313) 2 In computing the non_bonded_force, each atom potentially interacts with all the other atoms Hence, each UE needs read access to the full atomic position array Also, due to Newton's third law, each UE will be scattering contributions to the force across the full force array (the Examples section of the Data Sharing pattern) 3 One way to decompose the MD problem into tasks is to focus on the computations needed for a particular atom, that is, we can parallelize this problem by assigning atoms to UEs (the Examples section of the Task Decomposition pattern) Given that our target is a small cluster and from point (1) in the preceding list, we will only parallelize the force computations Because the network is slow for parallel computing and given the data dependency in point (2), we will:

In this chapter, you have learned:

One of the drawbacks of this approach, however, comes from the fact that there is no guaranteed ordering of multi-valued attributesTherefore, you have to insert some sort of modifier into each text chunk to indicate order Although you would not split text this short, it illustrates the issue If you have the text I went to the market last Thursday and split it into three parts of a multi-valued attribute named Body, SimpleDB might respond to your GetAttributes, or you Select with the following:

Keep a copy of the full force and coordinate arrays on each node Have each UE redundantly update positions and velocities for the atoms (that is, we assume it is cheaper to redundantly compute these terms than to do them in parallel and communicate the results) Have each UE compute its contributions to the force array and then combine (or reduce) the UEs' contributions into a single global force array copied onto each UE

About the Transmission Control Protocol About clients and servers About how to write and run a simple TCP socket client, using

The algorithm is a simple transformation from the sequential algorithm Pseudocode for this SPMD program is shown in Fig 58 As with any MPI program, the MPI include file is referenced at the top of the program The MPI environment is initialized and the ID is associated with the rank of the MPI process

Section 71 Overview Section 72 Multi-threading in Java Section 73 Synchronization Section 74 Interthread Communication Section 75 Thread Groups Section 76 Thread Priorities Section 77 Summary

Body: ["the market", "I went to ", " last Thursday"]

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